I imagine this to be the allegiances for ALIM (I haven't read APONS yet, so I'm sorry if I make some mistakes) :
ThunderClanLeader: Bramblestar - dark brown tabby tom with amber eyes
Deputy: Squirrelflight - dark ginger she-cat with green eyes and one white paw
Medicine cat(s): Jayfeather - gray tabby tom with blind blue eyes
Alderheart - dark ginger tom with amber eyes
Warriors: Thornclaw - golden-brown tabby tom
Whitewing - white she-cat with green eyes
Birchfall - light brown tabby tom
Mousewhisker - gray-and-white-tom
Apprentice, Baypaw (golden tabby tom)
Poppyfrost - pale tortoiseshell-and-white she-cat
Bristlefrost - pale gray she-cat
Lilyheart - small, dark tabby she-cat with white patches, and blue eyes
Apprentice, Flamepaw (black tom)
Bumblestripe - very pale gray tom with black stripes
Cherryfall - ginger she-cat
Molewhisker - brown-and-cream tom
Cinderheart - gray tabby she-cat
Apprentice, Finchpaw (tortoiseshell she-cat)
Blossomfall - tortoiseshell-and-white she-cat with petal-shaped white patches
Ivypool - silver-and-white tabby she-cat with dark blue eyes
Eaglewing - ginger she-cat
Apprentice, Myrtlepaw (pale brown she-cat)
Dewnose - gray-and-white tom
Thriftear - dark gray she-cat
Stormcloud - gray tabby tom
Hollytuft - black she-cat
Flipclaw - brown tabby tom
Fernsong - yellow tabby tom
Honeyfur - white she-cat with yellow splotches
Sparkpelt - orange tabby she-cat
Sorrelstripe - dark brown she-cat
Twigbranch - gray she-cat with green eyes
Finleap - light brown tom with ginger legs
Shellfur - tortoiseshell tom
Plumstone - black-and-ginger she-cat
Leafshade - tortoiseshell she-cat
Queens: Daisy - cream long-furred she-cat from the horseplace
Spotfur - spotted tabby she-cat
Elders: Graystripe - long-haired gray tom
Cloudtail - long-haired white tom with blue eyes
Brightheart - white she-cat with ginger patches
Brackenfur - golden-brown tabby tom
ShadowClan
Leader: Tigerstar - dark brown tabby tom
Deputy: Cloverfoot - gray tabby she-cat
Medicine cat(s): Puddleshine - brown tom with white splotches
Shadowsight - gray tabby tom
Mothwing - dappled golden she-cat
Warriors: Tawnypelt - tortoiseshell she-cat with green eyes
Dovewing - pale-gray she-cat with green eyes
Harelight - white tom
Icewing - white she-cat with blue eyes
Stonewing - white tom
Scorchfur - dark gray tom with slashed ears
Flaxfoot - brown tabby tom
Sparrowtail - large brown tabby tom
Snowbird - pure white she-cat with green eyes
Yarrowleaf - ginger she-cat with yellow eyes
Berryheart - black-and-white she-cat
Grassheart - pale brown tabby she-cat
Whorlpelt - gray-and-white tom
Hopwhisker - calico she-cat
Blazefire - white-and-ginger tom
Cinnamontail - brown tabby she-cat with white paws
Flowerstem - silver she-cat
Snaketooth - honey-colored tabby she-cat
Slatefur - sleek gray tom
Pouncestep - gray tabby she-cat
Lightleap - brown tabby she-cat
Gullswoop - white she-cat
Spireclaw - black-and-white tom
Hollowspring - black tom
Sunbeam - brown-and-white tabby she-cat
Elders: Oakfur - small brown tom
SkyClanLeader: Leafstar - brown-and-cream tabby she-cat with amber eyes
Deputy: Hawkwing - dark gray tabby tom with yellow eyes
Medicine cat(s): Frecklewish - mottled light brown tabby she-cat with spotted legs
Fidgetflake - black-and-white tom
Mediator: Tree - yellow tom with amber eyes
Warriors: Sparrowpelt - dark brown tabby tom
Macgyver - black-and-white tom
Dewspring - sturdy gray tom
Rootspring - yellow tom
Needleclaw - black-and-white she-cat
Plumwillow - dark gray she-cat
Sagenose - pale gray tom
Kitescratch - reddish-brown tom
Harrybrook - gray tom
Cherrytail - fluffy tortoiseshell and white she-cat
Cloudmist - white she-cat with yellow eyes
Blossomheart - ginger-and-white she-cat
Turtlecrawl - tortoiseshell she-cat
Rabbitleap - brown tom
Apprentice, Wrenpaw (golden tabby she-cat)
Reedclaw - small pale tabby she-cat
Mintfur - gray tabby she-cat with blue eyes
Nettlesplash - pale brown tom
Tinycloud - small white she-cat
Palesky - black-and-white she-cat
Violetshine - black-and-white she-cat with yellow eyes
Bellaleaf - pale orange she-cat with green eyes
Quailfeather - white tom with crow-black ears
Pigeonfoot - gray-and-white she-cat
Fringewhisker - white she-cat with brown splotches
Gravelnose - tan tom
Sunnypelt - ginger she-cat
Queens: Nectarsong - brown she-cat (mother to Beekit, a white-and-tabby she-cat, and Beetlekit, a tabby tom)
Elders: Fallowfern - pale brown she-cat who has lost her hearing
WindClanLeader: Harestar - brown-and-white tom
Deputy: Crowfeather - dark gray tom
Medicine cat(s): Kestrelflight - mottled gray tom with white splotches like kestrel feathers
Warriors: Nightcloud - black she-cat
Brindlewing - mottled brown she-cat
Appleshine - yellow tabby she-cat
Leaftail - dark tabby tom with amber eyes
Woodsong - brown she-cat
Emberfoot - gray tom with two dark paws
Breezepelt - black tom with amber eyes
Heathertail - light brown tabby she-cat with blue eyes
Featherpelt - gray tabby she-cat
Crouchfoot - ginger tom
Apprentice, Songpaw (tortoiseshell she-cat)
Larkwing - pale brown tabby she-cat
Sedgewhisker - light brown tabby she-cat
Apprentice, Flutterpaw (brown-and-white tom)
Slightfoot - black tom with a white flash on his chest
Oatclaw - pale brown tabby tom
Hootwhisker - dark gray tom
Apprentice, Whistlepaw (gray tabby she-cat)
Fernstripe - gray tabby she-cat
Elders: Whiskernose - light brown tom
Gorsetail - very pale gray-and-white she-cat with blue eyes
RiverClanLeader: Mistystar - gray she-cat with blue eyes
Deputy: Reedwhisker - black tom
Medicine cat(s): Alderheart
(temporary) - dark ginger tom with amber eyes
Warriors: Duskfur - brown tabby she-cat
Minnowtail - dark gray-and-white she-cat
Apprentice, Splashpaw (brown tabby tom)
Mallownose - light brown tabby tom
Havenpelt - black-and-white she-cat
Podlight - gray-and-white tom
Shimmerpelt - silver she-cat
Lizardtail - light brown tom
Apprentice, Fogpaw (gray-and-white she-cat)
Sneezecloud - gray-and-white tom
Brackenpelt - tortoiseshell she-cat
Jayclaw - gray tom
Owlnose - brown tabby tom
Gorseclaw - white tom with gray ears
Nightsky - dark gray she-cat with blue eyes
Breezeheart - brown-and-white she-cat
Queens: Curlfeather - pale brown she-cat (mother to Frostkit, a she-kit, Mistkit, a she-kit, and Graykit, a tom)
Elders: Mosspelt - tortoiseshell-and-white she-cat